Structural Classification of Proteins

Superfamily: Positive stranded ssRNA viruses

: uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
Superfamily: Positive stranded ssRNA viruses [88633]
uperfamily

Families:

Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (18)
the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
1. Human enterovirus B coat proteins [88635]
  1. Human coxsackievirus B3 [TaxId: 12072] [49681] (1)
    1. 1cov
      complexed with myr, plm
      1. chain 4,2 [83045]
      2. chain 3 [23566]
      3. chain 1 [23564]
  2. Human coxsackievirus A9 [TaxId: 12067] [49683] (1)
    1. 1d4m
      1. chain 4,2 [83046]
      2. chain 3 [23569]
      3. chain 1 [23567]
  3. Human echovirus 1 [TaxId: 46633] [49685] (1)
    1. 1ev1
      complexed with myr, plm
      1. chain 4,2 [83050]
      2. chain 3 [23572]
      3. chain 1 [23570]
  4. Human echovirus 11 [TaxId: 12078] [74890] (4)
    1. 1h8t
      complexed with doa, myr
      1. chain d,b [83061]
      2. chain c [70922]
      3. chain a [70920]
    2. 2c8i
      automatically matched to d1h8ta_
      1. region a:1-289 [130103]
    3. 2c8i
      automatically matched to d1h8tc_
      1. region c:1-238 [130104]
    4. 1upn
      1. chain d,b [99761]
      2. chain c [99763]
      3. chain a [99762]
2. Bovine enterovirus coat proteins [49676]
  1. Bovine enterovirus, VG-5-27 [TaxId: 12064] [49677] (1)
    1. 1bev
      complexed with myr, so4
      1. chain 4,2 [83040]
      2. chain 3 [23557]
      3. chain 1 [23555]
3. Poliovirus coat proteins [49666]
  1. Poliovirus type 1, strain Mahoney [TaxId: 12080] [49667] (12)
    1. 1hxs
      complexed with myr, plm
      1. chain 4,2 [83073]
      2. chain 3 [65954]
      3. chain 1 [65952]
    2. 1ar7
      complexed with myr, sph; mutant
      1. chain 4,2 [83032]
      2. chain 3 [23389]
      3. chain 1 [23387]
    3. 1po1
      complexed with j80, myr
      1. chain 4,2 [83102]
      2. chain 3 [23398]
      3. chain 1 [23396]
    4. 1al2
      complexed with myr, sph; mutant
      1. chain 4,2 [83030]
      2. chain 3 [23392]
      3. chain 1 [23390]
    5. 1ar9
      complexed with myr, sph; mutant
      1. chain 4,2 [83034]
      2. chain 3 [23395]
      3. chain 1 [23393]
    6. 1po2
      complexed with j77, myr
      1. chain 4,2 [83103]
      2. chain 3 [23401]
      3. chain 1 [23399]
    7. 1asj
      complexed with myr, sph
      1. chain 4,2 [83035]
      2. chain 3 [23404]
      3. chain 1 [23402]
    8. 1ar6
      complexed with myr, sph; mutant
      1. chain 4,2 [83031]
      2. chain 3 [23407]
      3. chain 1 [23405]
    9. 2plv
      complexed with myr, sph
      1. chain 4,2 [83137]
      2. chain 3 [23386]
      3. chain 1 [23384]
    10. 1ar8
      complexed with myr, sph; mutant
      1. chain 4,2 [83033]
      2. chain 3 [23410]
      3. chain 1 [23408]
    11. 1pov
      contains unprocessed VP0
      complexed with myr, sph
      1. chain 0 [23411]
      2. chain 3 [23413]
      3. chain 1 [23412]
    12. 1xyr
      automatically matched to d1pov1_
      1. region 1:71-302 [122460]
  2. Poliovirus type 2, strain Lansing [TaxId: 12083] [49668] (1)
    1. 1eah
      complexed with myr, sc4
      1. chain 4,2 [83047]
      2. chain 3 [23416]
      3. chain 1 [23414]
  3. Poliovirus type 3, strain Sabin [TaxId: 12086] [49669] (7)
    1. 1pvc
      complexed with myr, sph
      1. chain 4,2 [83104]
      2. chain 3 [23419]
      3. chain 1 [23417]
    2. 1vbb
      complexed with j80, myr
      1. chain 4,2 [83126]
      2. chain 3 [23422]
      3. chain 1 [23420]
    3. 1vbc
      complexed with j77, myr
      1. chain 4,2 [83127]
      2. chain 3 [23425]
      3. chain 1 [23423]
    4. 1vbe
      complexed with j78, myr; mutant
      1. chain 4,2 [83129]
      2. chain 3 [23431]
      3. chain 1 [23429]
    5. 1vbd
      complexed with j78, myr
      1. chain 4,2 [83128]
      2. chain 3 [23428]
      3. chain 1 [23426]
    6. 1vba
      complexed with j78, myr
      1. chain 4,2 [83125]
      2. chain 3 [23434]
      3. chain 1 [23432]
    7. 1piv
      complexed with myr, w71
      1. chain 4,2 [83101]
      2. chain 3 [23437]
      3. chain 1 [23435]
4. Rhinovirus coat proteins [49670]
  1. Human rhinovirus B 14 (HRV-14) [TaxId: 12131] [49671] (30)
    1. 1ncq
      complexed with w11
      1. chain d,b [91802]
      2. chain c [91804]
      3. chain a [91803]
    2. 1k5m
      grafted HIV-1 v3 loop in chain B
      complexed with sph
      1. chain d,b [83093]
      2. chain c [72080]
      3. chain a [72078]
    3. 4rhv
      1. chain 4,2 [83147]
      2. chain 3 [23440]
      3. chain 1 [23438]
    4. 1na1
      complexed with w11
      1. chain d,b [91742]
      2. chain c [91744]
      3. chain a [91743]
    5. 1rud
      complexed with w84; mutant
      1. chain 4,2 [83115]
      2. chain 3 [23446]
      3. chain 1 [23444]
    6. 1r09
      complexed with dms, jen
      1. chain 4,2 [83110]
      2. chain 3 [23443]
      3. chain 1 [23441]
    7. 1vrh
      complexed with sd8; mutant
      1. chain 4,2 [83130]
      2. chain 3 [23467]
      3. chain 1 [23465]
    8. 2rr1
      complexed with w8r
      1. chain 4,2 [83143]
      2. chain 3 [23455]
      3. chain 1 [23453]
    9. 2r07
      complexed with w33
      1. chain 4,2 [83140]
      2. chain 3 [23449]
      3. chain 1 [23447]
    10. 2rs1
      complexed with w84
      1. chain 4,2 [83144]
      2. chain 3 [23458]
      3. chain 1 [23456]
    11. 1rui
      complexed with w84; mutant
      1. chain 4,2 [83120]
      2. chain 3 [23464]
      3. chain 1 [23462]
    12. 1ruf
      mutant
      1. chain 4,2 [83117]
      2. chain 3 [23473]
      3. chain 1 [23471]
    13. 1rue
      complexed with w35; mutant
      1. chain 4,2 [83116]
      2. chain 3 [23470]
      3. chain 1 [23468]
    14. 2rm2
      complexed with w43
      1. chain 4,2 [83141]
      2. chain 3 [23452]
      3. chain 1 [23450]
    15. 1ruh
      complexed with w84; mutant
      1. chain 4,2 [83119]
      2. chain 3 [23461]
      3. chain 1 [23459]
    16. 1hrv
      complexed with sdz
      1. chain 4,2 [83063]
      2. chain 3 [23479]
      3. chain 1 [23477]
    17. 1ruj
      mutant
      1. chain 4,2 [83121]
      2. chain 3 [23500]
      3. chain 1 [23498]
    18. 2rmu
      mutant
      1. chain 4,2 [83142]
      2. chain 3 [23503]
      3. chain 1 [23501]
    19. 1rmu
      complexed with trs; mutant
      1. chain 4,2 [83113]
      2. chain 3 [23506]
      3. chain 1 [23504]
    20. 1hri
      complexed with s57
      1. chain 4,2 [83062]
      2. chain 3 [23476]
      3. chain 1 [23474]
    21. 2r06
      complexed with w35
      1. chain 4,2 [83139]
      2. chain 3 [23494]
      3. chain 1 [23492]
    22. 1rug
      complexed with w35; mutant
      1. chain 4,2 [83118]
      2. chain 3 [23497]
      3. chain 1 [23495]
    23. 2hwb
      complexed with w91; mutant
      1. chain 4,2 [83131]
      2. chain 3 [23509]
      3. chain 1 [23507]
    24. 2r04
      complexed with w71
      1. chain 4,2 [83138]
      2. chain 3 [23488]
      3. chain 1 [23486]
    25. 2rs5
      complexed with w56
      1. chain 4,2 [83146]
      2. chain 3 [23491]
      3. chain 1 [23489]
    26. 2hwc
      complexed with w54; mutant
      1. chain 4,2 [83132]
      2. chain 3 [23512]
      3. chain 1 [23510]
    27. 2rs3
      complexed with w59
      1. chain 4,2 [83145]
      2. chain 3 [23482]
      3. chain 1 [23480]
    28. 1r08
      complexed with w42
      1. chain 4,2 [83109]
      2. chain 3 [23485]
      3. chain 1 [23483]
    29. 1ruc
      complexed with w35; mutant
      1. chain 4,2 [83114]
      2. chain 3 [23515]
      3. chain 1 [23513]
    30. 1rvf
      1. chain 4,2 [83122]
      2. chain 3 [23518]
      3. chain 1 [23516]
  2. Human rhinovirus 16, (HRV-16) [TaxId: 31708] [49672] (9)
    1. 1aym
      complexed with dao, myr, zn; mutant
      1. chain 4,2 [83036]
      2. chain 3 [23521]
      3. chain 1 [23519]
    2. 1nd2
      complexed with myr, zn
      1. chain d,b [91809]
      2. chain c [91811]
      3. chain a [91810]
    3. 1qju
      complexed with myr, w01, zn; mutant
      1. chain 4,2 [83105]
      2. chain 3 [23524]
      3. chain 1 [23522]
    4. 1ncr
      complexed with myr, w11, zn
      1. chain d,b [91805]
      2. chain c [91807]
      3. chain a [91806]
    5. 1qjy
      complexed with myr, w03, zn; mutant
      1. chain 4,2 [83107]
      2. chain 3 [23527]
      3. chain 1 [23525]
    6. 1c8m
      complexed with w11, zn
      1. chain 4,2 [83044]
      2. chain 3 [23530]
      3. chain 1 [23528]
    7. 1ayn
      complexed with dao, myr, zn; mutant
      1. chain 4,2 [83037]
      2. chain 3 [23536]
      3. chain 1 [23534]
    8. 1nd3
      complexed with w11, zn
      1. chain d,b [91812]
      2. chain c [91814]
      3. chain a [91813]
    9. 1qjx
      complexed with myr, w02, zn; mutant
      1. chain 4,2 [83106]
      2. chain 3 [23533]
      3. chain 1 [23531]
  3. Human rhinovirus A 1A (HRV-1A) [TaxId: 12134] [49673] (4)
    1. 1r1a
      complexed with suc
      1. chain 4,2 [83111]
      2. chain 3 [23539]
      3. chain 1 [23537]
    2. 2hwd
      complexed with w91
      1. chain 4,2 [83133]
      2. chain 3 [23542]
      3. chain 1 [23540]
    3. 2hwf
      complexed with jen
      1. chain 4,2 [83135]
      2. chain 3 [23548]
      3. chain 1 [23546]
    4. 2hwe
      complexed with w54
      1. chain 4,2 [83134]
      2. chain 3 [23545]
      3. chain 1 [23543]
  4. Human rhinovirus A 2 (HRV-2) [TaxId: 12130] [49674] (2)
    1. 1fpn
      complexed with dao
      1. chain 4,2 [83053]
      2. chain 3 [23551]
      3. chain 1 [23549]
    2. 1v9u
      complexed with ca, dao
      1. chain 4,2 [100550]
      2. chain 3 [100552]
      3. chain 1 [100551]
  5. Human rhinovirus 3, (HRV-3) [TaxId: 44130] [49675] (1)
    1. 1rhi
      complexed with ca
      1. chain 4,2 [83112]
      2. chain 3 [23554]
      3. chain 1 [23552]
5. Aphthovirus (Foot-and-mouth disease virus) coat proteins [49659]
  1. FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110] [49660] (4)
    1. 1qqp
      complexed with idu, sgn
      1. chain 4,2 [83108]
      2. chain 3 [23365]
      3. chain 1 [23363]
    2. 1bbt
      1. chain 4,2 [83039]
      2. chain 3 [23368]
      3. chain 1 [23366]
    3. 1fod
      1. chain 4,2 [83052]
      2. chain 3 [23371]
      3. chain 1 [23369]
    4. 1fmd
      1. chain 4,2 [83051]
      2. chain 3 [23374]
      3. chain 1 [23372]
6. Theilovirus capsid proteins [49686]
  1. Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124] [49687] (2)
    1. 1tme
      1. chain 4,2 [83123]
      2. chain 3 [23575]
      3. chain 1 [23573]
    2. 1tmf
      1. chain 4,2 [83124]
      2. chain 3 [23578]
      3. chain 1 [23576]
7. Mengo encephalomyocarditis virus coat proteins [49678]
  1. Mengovirus [TaxId: 12107] [49679] (2)
    1. 2mev
      complexed with po4
      1. chain 4,2 [83136]
      2. chain 3 [23560]
      3. chain 1 [23558]
    2. 1mec
      complexed with po4
      1. chain 4,2 [83100]
      2. chain 3 [23563]
      3. chain 1 [23561]
8. Swine vesicular disease virus coat proteins [89225]
  1. Swine vesicular disease virus [TaxId: 12075] [89226] (2)
    1. 1oop
      complexed with myr, sph
      1. chain d,b [87203]
      2. chain a [87204]
      3. chain c [87205]
    2. 1mqt
      complexed with spl
      1. chain d,b [91424]
      2. chain a [91425]
      3. chain c [91426]
9. Insect picorna-like virus coat proteins [49654]
  different genetic order of VP segments due to extensive genome shuffling
  1. Cricket paralysis virus [TaxId: 12136] [49655] (1)
    1. 1b35
      1. chain b [23334]
      2. chain d,c [83038]
      3. chain a [23333]
Comoviridae-like VP [88636] (3)
duplication: mature coat protein consists of three similar domains that can be in a single chain or in two separate chains
1. Nepovirus capsid protein [49629]
  duplication: cnosists of three very similar domains
  1. TRSV (Tobacco ringspot virus) [TaxId: 12282] [49630] (1)
    1. 1a6c
      1. region a:1-176 [23296]
      2. region a:177-348 [23297]
      3. region a:349-513 [23298]
2. Comovirus coat proteins (VP37 and VP23) [49627]
  chain 1 is one-domain VP23; chain 2 is two-domain VP37
  1. CPMV (Cowpea mosaic virus) [TaxId: 12264] [89227] (4)
    1. 1ny7
      1. region 2:1-182 [86399]
      2. region 2:183-369 [86400]
      3. region 1:1-189 [86398]
    2. 2bfu
      automatically matched to d1ny721
      1. region l:1-182 [128453]
    3. 2bfu
      automatically matched to d1ny722
      1. region l:183-369 [128454]
    4. 2bfu
      automatically matched to d1ny711
      1. region s:1-189 [128455]
  2. BPMV (Bean pod mottle virus) [TaxId: 12260] [49628] (3)
    1. 1pgl
      1. region 2:1-182 [94691]
      2. region 2:183-370 [94692]
      3. region 1:1-185 [94690]
    2. 1pgw
      1. region 2:20-182 [94694]
      2. region 2:183-370 [94695]
      3. region 1:1-185 [94693]
    3. 1bmv
      1. region 2:3001-3182 [83042]
      2. region 2:2001-2189 [83043]
      3. region 1:1001-1185 [83041]
Caliciviridae-like VP [88637] (1)
1. Calicivirus capsid protein [63691]
  includes the P (protruding) domain of complex beta-structure containing a beta-barrel similar to the second domain of EF-TU
  1. Norwalk virus [TaxId: 11983] [63692] (1)
    1. 1ihm
      1. chain a [62385]
      2. chain b [62386]
      3. chain c [62387]
Nodaviridae-like VP [88638] (3)
1. Alphanodavirus capsid protein [49648]
  1. Black beetle virus [TaxId: 12285] [49649] (1)
    1. 2bbv
      protein/RNA complex; complexed with ca
      1. chain a [23323]
      2. chain b [23324]
      3. chain c [23325]
  2. Nodamura virus [TaxId: 12288] [49650] (1)
    1. 1nov
      1. chain a [23326]
      2. chain b [23327]
      3. chain c [23328]
  3. Pariacoto virus [TaxId: 103782] [49651] (1)
    1. 1f8v
      complexed with ca, so4
      1. chain a,d [23329]
      2. chain b,e [23330]
      3. chain c,f [23331]
Tetraviridae-like VP [101568] (1)
1. Tetraomegavirus capsid protein [101569]
  contains an insert beta-sandwich domain
  1. Nudaurelia capensis omega virus [TaxId: 12541] [101570] (1)
    1. 1ohf
      complexed with mg
      1. chain a [93014]
      2. chain b [93015]
      3. chain c [93016]
      4. chain d [93017]
Bromoviridae-like VP [88639] (4)
1. Cucumovirus coat protein [88640]
  1. CMV (Cucumber mosaic virus), strain fny [TaxId: 12305] [49646] (1)
    1. 1f15
      1. chain a [23320]
      2. chain b [23321]
      3. chain c [23322]
  2. TAV (Tomato aspermy virus) [TaxId: 12315] [82012] (1)
    1. 1laj
      complexed with mg, po4
      1. chain a [77865]
      2. chain b [77866]
      3. chain c [77867]
  3. BMV (Brome mosaic virus) [TaxId: 12302] [74886] (31)
    1. 1yc6
      automatically matched to d1js9b_
      1. region 1:36-189 [122911]
    2. 1yc6
      automatically matched to d1js9b_
      1. region 2:36-189 [122912]
    3. 1yc6
      automatically matched to d1js9b_
      1. region 3:36-189 [122913]
    4. 1yc6
      automatically matched to d1js9b_
      1. region 4:36-189 [122914]
    5. 1yc6
      automatically matched to d1js9b_
      1. region a:36-189 [122915]
    6. 1yc6
      automatically matched to d1js9b_
      1. region b:36-189 [122916]
    7. 1yc6
      automatically matched to d1js9b_
      1. region c:36-189 [122917]
    8. 1yc6
      automatically matched to d1js9b_
      1. region d:36-189 [122918]
    9. 1yc6
      automatically matched to d1js9b_
      1. region e:36-189 [122919]
    10. 1yc6
      automatically matched to d1js9b_
      1. region f:36-189 [122920]
    11. 1yc6
      automatically matched to d1js9b_
      1. region g:36-189 [122921]
    12. 1yc6
      automatically matched to d1js9b_
      1. region h:36-189 [122922]
    13. 1yc6
      automatically matched to d1js9b_
      1. region i:36-189 [122923]
    14. 1yc6
      automatically matched to d1js9b_
      1. region j:36-189 [122924]
    15. 1yc6
      automatically matched to d1js9b_
      1. region k:36-189 [122925]
    16. 1yc6
      automatically matched to d1js9b_
      1. region l:36-189 [122926]
    17. 1yc6
      automatically matched to d1js9b_
      1. region m:36-189 [122927]
    18. 1yc6
      automatically matched to d1js9b_
      1. region n:36-189 [122928]
    19. 1yc6
      automatically matched to d1js9b_
      1. region o:36-189 [122929]
    20. 1yc6
      automatically matched to d1js9b_
      1. region p:36-189 [122930]
    21. 1yc6
      automatically matched to d1js9b_
      1. region q:36-189 [122931]
    22. 1yc6
      automatically matched to d1js9b_
      1. region r:36-189 [122932]
    23. 1yc6
      automatically matched to d1js9b_
      1. region s:36-189 [122933]
    24. 1yc6
      automatically matched to d1js9b_
      1. region t:36-189 [122934]
    25. 1yc6
      automatically matched to d1js9b_
      1. region u:36-189 [122935]
    26. 1yc6
      automatically matched to d1js9b_
      1. region v:36-189 [122936]
    27. 1yc6
      automatically matched to d1js9b_
      1. region w:36-189 [122937]
    28. 1yc6
      automatically matched to d1js9b_
      1. region x:36-189 [122938]
    29. 1yc6
      automatically matched to d1js9b_
      1. region y:36-189 [122939]
    30. 1yc6
      automatically matched to d1js9b_
      1. region z:36-189 [122940]
    31. 1js9
      complexed with egl, mg
      1. chain a [71840]
      2. chain b [71841]
      3. chain c [71842]
  4. Cowpea chlorotic mottle virus [TaxId: 12303] [49636] (1)
    1. 1cwp
      protein/RNA complex
      1. chain a [23305]
      2. chain b [23306]
      3. chain c [23307]
Tymoviridae-like VP [88641] (3)
1. Tymovirus coat protein [88642]
  1. PHMV (Physalis mottle virus) [TaxId: 72539] [49642] (2)
    1. 1e57
      1. chain a [59259]
      2. chain b [59260]
      3. chain c [59261]
    2. 1qjz
      1. chain a [23314]
      2. chain b [23315]
      3. chain c [23316]
  2. DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821] [49644] (1)
    1. 1ddl
      1. chain a [23317]
      2. chain b [23318]
      3. chain c [23319]
  3. TYMV (Turnip yellow mosaic virus) [TaxId: 12154] [49640] (2)
    SQ P03608
    1. 1auy
      1. chain a [23311]
      2. chain b [23312]
      3. chain c [23313]
    2. 1w39
      1. chain a [109146]
      2. chain b [109147]
      3. chain c [109148]
Tombusviridae-like VP [88643] (7)
1. Necrovirus coat protein [49637]
  1. TNV (Tobacco necrosis virus) [TaxId: 12054] [49638] (1)
    1. 1c8n
      complexed with ca
      1. chain a [23308]
      2. chain b [23309]
      3. chain c [23310]
2. Tombusvirus coat protein [49633]
  1. TBSV (Tomato bushy stunt virus) [TaxId: 12145] [49634] (1)
    1. 2tbv
      complexed with ca
      1. chain a [23302]
      2. chain b [23303]
      3. chain c [23304]
3. Carmovirus coat protein [89228]
  1. CarMV (Carnation mottle virus) [TaxId: 11986] [89229] (1)
    1. 1opo
      complexed with ca, so4
      1. chain a [87240]
      2. chain b [87241]
      3. chain c [87242]
4. Sobemovirus coat protein [88644]
  1. SMV (Sesbania mosaic virus) [TaxId: 12558] [49624] (7)
    SQ Q9EB06
    1. 1smv
      complexed with ca
      1. chain a [23288]
      2. chain b [23289]
      3. chain c [23290]
    2. 2vq0
      automatically matched to d1vaka_
      complexed with ca; mutant
      1. region a:73-268 [153422]
    3. 2vq0
      automatically matched to d1vaka_
      complexed with ca; mutant
      1. region b:73-268 [153423]
    4. 2vq0
      automatically matched to d1vaka_
      complexed with ca; mutant
      1. region c:73-268 [153424]
    5. 1vak
      deletion mutant
      1. chain a [113600]
    6. 1vb4
      deletion mutant
      1. chain a [113603]
    7. 1vb2
      deletion mutant
      1. chain a [113602]
  2. SBMV (Southern bean mosaic virus), cow pea strain [TaxId: 12139] [49632] (1)
    1. 4sbv
      complexed with ca
      1. chain a [23299]
      2. chain b [23300]
      3. chain c [23301]
  3. RYMV (Rice yellow mottle virus) [TaxId: 31744] [49626] (1)
    1. 1f2n
      complexed with ca
      1. chain a [23291]
      2. chain b [23292]
      3. chain c [23293]
  4. Cocksfoot mottle virus [TaxId: 40979] [82010] (1)
    1. 1ng0
      complexed with ca
      1. chain a [80475]
      2. chain b [80476]
      3. chain c [80477]
Birnaviridae-like VP [141109] (1)
dsRNA virus but unlike the other dsRNA viruses has a genomic arrangement and genomic replication strategy similar to +sRNA viruses; includes Pfam 01766; Birnavirus VP2 protein
1. Birnavirus VP2 [141110]
  Link between +sRNA and dsRNA viruses two domains - the first similar to scop_sf 88633 and the second, insert domain is similar to scop_sf 49818. dsRNA virus but unlike the other dsRNA viruses has a genomic arrangement and genomic replication strategy similar to +sRNA viruses
  1. Infectious bursal disease virus [TaxId: 10995] [141111] (41)
    SQ P15480 11-431! SQ P61825 8-440! SQ Q6S9I7 11-429
    1. 2df7
      complexed with ca, cl
      1. region a:11-429 [131449]
    2. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region b:12-429 [131450]
    3. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region c:11-428 [131451]
    4. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region d:11-429 [131452]
    5. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region e:11-429 [131453]
    6. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region f:11-427 [131454]
    7. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region g:12-428 [131455]
    8. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region h:12-429 [131456]
    9. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region i:11-428 [131457]
    10. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region j:12-429 [131458]
    11. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region k:12-429 [131459]
    12. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region l:11-428 [131460]
    13. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region m:12-428 [131461]
    14. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region n:11-427 [131462]
    15. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region o:12-429 [131463]
    16. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region p:11-429 [131464]
    17. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region q:11-429 [131465]
    18. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region r:12-427 [131466]
    19. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region s:12-427 [131467]
    20. 2df7
      automatically matched to 2DF7 A:11-429
      complexed with ca, cl
      1. region t:11-428 [131468]
    21. 2gsy
      complexed with ca
      1. region a:8-440 [135599]
    22. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region b:8-440 [135600]
    23. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region c:8-440 [135601]
    24. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region d:8-440 [135602]
    25. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region e:8-440 [135603]
    26. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region f:8-440 [135604]
    27. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region g:8-440 [135605]
    28. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region h:8-440 [135606]
    29. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region i:8-440 [135607]
    30. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region j:8-440 [135608]
    31. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region k:8-440 [135609]
    32. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region l:8-440 [135610]
    33. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region m:8-440 [135611]
    34. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region n:8-440 [135612]
    35. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region o:8-440 [135613]
    36. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region p:8-440 [135614]
    37. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region q:8-440 [135615]
    38. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region r:8-440 [135616]
    39. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region s:8-440 [135617]
    40. 2gsy
      automatically matched to 2GSY A:8-440
      complexed with ca
      1. region t:8-440 [135618]
    41. 1wcd
      1. region j:11-431 [120887]