Structural Classification of Proteins
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Fold: Immunoglobulin-like beta-sandwich

sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands

Superfamilies:

  1. Immunoglobulin [48726] (4)
    link to SUPERFAMILY database - Superfamily
    1. V set domains (antibody variable domain-like) [48727] (90)
      1. Immunoglobulin light chain kappa variable domain, VL-kappa [88519]
        VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
        1. Human (Homo sapiens), cluster 1 [TaxId: 9606] [88520] (18) picpic
        2. Human (Homo sapiens), cluster 2 [TaxId: 9606] [88521] (10) picpic
        3. Human (Homo sapiens), cluster 3.1 [TaxId: 9606] [88522] (10) picpic
        4. Human (Homo sapiens), cluster 3.2 [TaxId: 9606] [88523] (68) picpic
        5. Mouse (Mus musculus), cluster 1.1 [TaxId: 10090] [88524] (128) picpic
          SQ P01631 #KV2G_MOUSE Ig kappa chain V-II region 26-10; 79% sequence identity ! SQ P06310 # KV2F_HUMAN IG KAPPA CHAIN V-II REGION RPMI 6410 PRECURSOR ! SQ P03976 # KV2E_MOUSE (P03976) Ig kappa chain V-II region 17S29.1 ! SQ P01642 21-115 # ! KV2G_MOUSE IG KAPPA CHAIN V-II REGION 26-10
        6. Mouse (Mus musculus), cluster 1.2 [TaxId: 10090] [88525] (36) picpic
        7. Mouse (Mus musculus), cluster 2 [TaxId: 10090] [88526] (34) picpic
        8. Mouse (Mus musculus), cluster 3.1 [TaxId: 10090] [88527] (14) picpic
        9. Mouse (Mus musculus), cluster 3.2 [TaxId: 10090] [88528] (65) picpic
          SQ P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1
        10. Mouse (Mus musculus), cluster 3.3 [TaxId: 10090] [88529] (2) picpic
        11. Mouse (Mus musculus), cluster 3.4 [TaxId: 10090] [88530] (6) picpic
        12. Mouse (Mus musculus), cluster 4 [TaxId: 10090] [88531] (189) picpic
          SQ P01645 1-106 # 95% sequense identity; KV5L_MOUSE Ig kappa chain V-V region HP 93G7 ! SQ NA # natural chimera; best hits are: SQ P01637 (Ig kappa chain V-V region T1) and SQ P01837 (Ig kappa chain C region) ! SQ NA # humanized antibody ! SQ NA # part of Fab 28 against HIV-1 RT ! SQ P01642 21-115 # ! KV5I_MOUSE Ig kappa chain V-V region L7 precursor
        13. Rat (Rattus norvegicus) [TaxId: 10116] [88532] (11) picpic
        14. Engineered (including hybrid species) [88533] (53) picpic
          SQ NA # humanized antidoby; bactericidal Fab-h6831 ! SQ NA # Humanized antibody ! SQ NA # humanized antibody ! SQ NA # engineered antibody
        15. synthetic construct [158859] (1) picpic
        16. Escherichia coli [TaxId: 562] [158860] (8) picpic
      2. Immunoglobulin light chain lambda variable domain, VL-lambda [88534]
        VL-lambda domains of human antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the human genome; mouse VL-lambda domains belong to a single germline family
        1. Human (Homo sapiens), cluster 1 [TaxId: 9606] [88535] (4) picpic
          SQ NA # Bence-Jones protein JTO ! SQ P06317 # Ig lambda chain V-VI region SUT
        2. Human (Homo sapiens), cluster 2 [TaxId: 9606] [88536] (11) picpic
        3. Human (Homo sapiens), cluster 3.1 [TaxId: 9606] [88537] (3) picpic
        4. Human (Homo sapiens), cluster 3.2 [TaxId: 9606] [88538] (1) picpic
        5. Human (Homo sapiens), cluster 4 [TaxId: 9606] [88539] (23) picpic
        6. Human (Homo sapiens), cluster 5 [TaxId: 9606] [88540] (9) picpic
          SQ Q8N355 20-230 # 94% sequence identity; natural chimera: antibody light chain (Fab HYB3)
        7. Mouse (Mus musculus) [TaxId: 10090] [88541] (35) picpic
        8. Rat (Rattus norvegicus) [TaxId: 10116] [101504] (8) picpic
        9. Hamster (Cricetulus griseus) [TaxId: 10029] [88542] (1) picpic
      3. Immunoglobulin heavy chain variable domain, VH [88543]
        VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
        1. Human (Homo sapiens), cluster 1 [TaxId: 9606] [88544] (47) picpic
        2. Human (Homo sapiens), cluster 2.1 [TaxId: 9606] [88545] (3) picpic
        3. Human (Homo sapiens), cluster 2.2 [TaxId: 9606] [88546] (3) picpic
        4. Human (Homo sapiens), cluster 3 [TaxId: 9606] [88547] (66) picpic
          SQ Q6N089 20-243 # 95% sequence identity; natural chimera: antibody heavy chain (Fab HYB3)
        5. Human (Homo sapiens), cluster 4 [TaxId: 9606] [101505] (4) picpic
        6. Mouse (Mus musculus), cluster 1 [TaxId: 10090] [88548] (51) picpic
          SQ P01796 # ! HV27_MOUSE Ig heavy chain V-III region A4
        7. Mouse (Mus musculus), cluster 2.1 [TaxId: 10090] [88549] (14) picpic
          SQ P18527 # HV56_MOUSE Ig heavy chain V region 914; 90% sequence identity
        8. Mouse (Mus musculus), cluster 2.2 [TaxId: 10090] [88550] (55) picpic
          SQ P01811 # HV41_MOUSE (P01811) Ig heavy chain V region UPC10
        9. Mouse (Mus musculus), cluster 3.1 [TaxId: 10090] [88551] (34) picpic
          SQ NA # natural chimera; best hits are: SQ P01751 (Ig heavy chain V region B1-8/186-2) and SQ P01864 (Ig gamma-2A chain C region secreted form)
        10. Mouse (Mus musculus), cluster 3.2 [TaxId: 10090] [88552] (156) picpic
          SQ P01756 1-117 # 78% sequense identity; HV12_MOUSE Ig heavy chain V region MOPC 104E ! SQ NA # humanized antibody ! SQ P01750 # HV06_MOUSE Ig heavy chain V region 102 precursor ! SQ P01750 20-116 # ! HV06_MOUSE Ig heavy chain V region 102 precursor
        11. Mouse (Mus musculus), cluster 3.3 [TaxId: 10090] [88553] (1) picpic
        12. Mouse (Mus musculus), cluster 4 [TaxId: 10090] [88554] (35) picpic
          SQ P06327 20-117 # HV52_MOUSE (P06327) Ig heavy chain V region VH558 A1/A4 precursor; 57% sequence identity ! SQ P01631 # KV2G_MOUSE (P01631) Ig kappa chain V-II region 26-10
        13. Mouse (Mus musculus), cluster 5 [TaxId: 10090] [88555] (36) picpic
        14. Mouse (Mus musculus), cluster 6 [TaxId: 10090] [88556] (12) picpic
          SQ NA # part of Fab 28 against HIV-1 RT
        15. Mouse (Mus musculus), cluster 7.1 [TaxId: 10090] [88557] (41) picpic
          SQ P18532 # HV61_MOUSE Ig heavy chain V region 1B43 precursor
        16. Mouse (Mus musculus), cluster 7.2 [TaxId: 10090] [88558] (29) picpic
        17. Mouse (Mus musculus), cluster 7.3 [TaxId: 10090] [88559] (2) picpic
        18. Rat (Rattus norvegicus) [TaxId: 10116] [88560] (17) picpic
        19. Hamster (Cricetulus griseus) [TaxId: 10029] [88561] (1) picpic
        20. Engineered (including hybrid species) [88562] (82) picpic
          SQ NA # humanized antidoby; bactericidal Fab-h6831 ! SQ NA # humanized antibody ! SQ NA # Humanized antibody ! SQ NA # engineered antibody
        21. Escherichia coli [TaxId: 562] [158861] (3) picpic
        22. synthetic construct [158862] (2) picpic
      4. Camelid IG heavy chain variable domain, VHh [88563]
        1. Camel (Camelus dromedarius) [TaxId: 9838] [88564] (23) picpic
          SQ NA # camelid antibody
        2. Llama (Lama glama) [TaxId: 9844] [88565] (9) picpic
        3. Homo sapiens [TaxId: 9606] [158863] (2) picpic
      5. T-cell antigen receptor [48933]
        sequences may differ within each classified species
        1. Mouse (Mus musculus), alpha-chain [TaxId: 10090] [48934] (25) picpic
        2. Human (Homo sapiens), alpha-chain [TaxId: 9606] [48935] (21) picpic
        3. Mouse (Mus musculus), beta-chain [TaxId: 10090] [48936] (36) picpic
        4. Human (Homo sapiens), beta-chain [TaxId: 9606] [48937] (52) picpic
        5. Human (Homo sapiens), gamma-chain [TaxId: 9606] [63651] (11) picpic
        6. Human (Homo sapiens), delta-chain [TaxId: 9606] [48938] (4) picpic
      6. Immunoreceptor CTLA-4 (CD152), N-terminal fragment [48939]
        1. Human (Homo sapiens) [TaxId: 9606] [48940] (3) picpic
        2. Mouse (Mus musculus) [TaxId: 10090] [48941] (1) picpic
      7. Myelin membrane adhesion molecule P0 [48728]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [48729] (1) picpic
      8. Myelin oligodendrocyte glycoprotein (MOG) [89174]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [89175] (3) picpic
      9. Coxsackie virus and adenovirus receptor (Car), domain 1 [48730]
        1. Human (Homo sapiens) [TaxId: 9606] [48731] (19) picpic
      10. N-terminal domain of sialoadhesin [48732]
        1. Mouse (Mus musculus) [TaxId: 10090] [48733] (8) picpic
          SQ Q62230 20-130
      11. N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) [89176]
        1. Human (Homo sapiens) [TaxId: 9606] [89177] (6) picpic
      12. NK cell activating receptor NKP44 [89178]
        a triggering partner in natural cytotoxicity
        1. Human (Homo sapiens) [TaxId: 9606] [89179] (1) picpic
      13. TREM-1 (triggering receptor expressed on myeloid cells 1) [101506]
        1. Human (Homo sapiens) [TaxId: 9606] [101507] (2) picpic
          SQ Q9NP99 21-133
        2. Mouse (Mus musculus) [TaxId: 10090] [117037] (1) picpic
          SQ Q9JKE2 25-134
      14. CD8 [48734]
        1. Human (Homo sapiens) [TaxId: 9606] [48735] (2) picpic
        2. Mouse (Mus musculus) [TaxId: 10090] [48736] (6) picpic
        3. Mouse (Mus musculus), beta-chain [TaxId: 10090] [158864] (2) picpic
          SQ P10300 22-136
      15. CD4 V-set domains [48737]
        1. Human (Homo sapiens) [TaxId: 9606] [48738] (27) picpic
        2. Rat (Rattus rattus) [TaxId: 10117] [48739] (1) picpic
      16. CD2, first domain [48740]
        1. Human (Homo sapiens) [TaxId: 9606] [48741] (4) picpic
        2. Rat (Rattus norvegicus) [TaxId: 10116] [48742] (5) picpic
      17. CD2-binding domain of CD58, N-terminal domain [48743]
        1. Human (Homo sapiens) [TaxId: 9606] [48744] (3) picpic
      18. CD80, N-terminal domain [48745]
        a soluble form of b7-1
        1. Human (Homo sapiens) [TaxId: 9606] [48746] (2) picpic
      19. CD86 (b7-2), N-terminal domain [63635]
        1. Human (Homo sapiens) [TaxId: 9606] [63636] (2) picpic
      20. Junction adhesion molecule, JAM, N-terminal domain [48747]
        1. Mouse (Mus musculus) [TaxId: 10090] [48748] (1) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [89180] (1) picpic
      21. Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain [81942]
        1. Mouse (Mus musculus) [TaxId: 10090] [81943] (1) picpic
      22. Tyrosine-protein kinase receptor tyro3, N-terminal domain [101508]
        1. Human (Homo sapiens) [TaxId: 9606] [101509] (1) picpic
      23. Programmed cell death protein 1, PD1, extracellular domain [101510]
        1. Mouse (Mus musculus) [TaxId: 10090] [101511] (4) picpic
      24. HSV glycoprotein D [63637]
        1. Herpes simplex virus type 1 [TaxId: 10298] [63638] (2) picpic
          elaborated with insertions and N- and C-terminal extensions
      25. Novel antigen receptor (against lysozyme) [110042]
        1. Nurse shark (Ginglymostoma cirratum) [TaxId: 7801] [110043] (7) picpic
          SQ Q8AXI4 # fragment
      26. Novel antigen receptor 12Y-1 [110044]
        1. Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098] [110045] (1) picpic
          SQ Q6X1E7 # fragment
      27. Novel antigen receptor 12Y-2 [110046]
        1. Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098] [110047] (1) picpic
          SQ Q6X1E6 # fragment
      28. Polymeric-immunoglobulin receptor, PIGR [117038]
        1. Human (Homo sapiens) [TaxId: 9606] [117039] (1) picpic
          SQ P01833 20-127 # N-terminal, ligand-binding domain
      29. Alphaherpesvirus glycoprotein E [141008]
        elaborated with insertions and C-terminal extensions
        1. Human herpesvirus 1 [TaxId: 10298] [141009] (4) picpic
          SQ P04488 218-394! SQ P04488 220-390
      30. CD28 [158865]
        T-cell-specific surface glycoprotein
        1. Human (Homo sapiens) [TaxId: 9606] [158866] (1) picpic
          SQ P10747 19-136
      31. Kin of IRRE-like protein 3, KIRREL3 [158867]
        1. Human (Homo sapiens) [TaxId: 9606] [158868] (1) picpic
          SQ Q8IZU9 413-521
      32. B- and T-lymphocyte attenuator CD272 [158869]
        1. Human (Homo sapiens) [TaxId: 9606] [158870] (2) picpic
          SQ Q7Z6A9 34-137
    2. C1 set domains (antibody constant domain-like) [48942] (70)
      1. Immunoglobulin light chain kappa constant domain, CL-kappa [88566]
        1. Mouse (Mus musculus) [TaxId: 10090] [88567] (347) picpic
          SQ P01837# KAC_MOUSE Ig kappa chain C region; 99% sequence identity ! SQ NA # natural chimera; best hits are: SQ P01637 (Ig kappa chain V-V region T1) and SQ P01837 (Ig kappa chain C region) ! SQ P01837 # KAC_MOUSE Ig kappa chain C region ! SQ P01837 # KAC_MOUSE (P01837) Ig kappa chain C region ! SQ NA # part of Fab 28 against HIV-1 RT ! SQ P01837 # ! KAC_MOUSE Ig kappa chain C region
        2. Rat (Rattus norvegicus) [TaxId: 10116] [88568] (8) picpic
        3. Human (Homo sapiens) [TaxId: 9606] [88569] (168) picpic
          SQ NA # humanized antibody ! SQ P01834 # KAC_HUMAN Ig kappa chain C region ! SQ P01834 # KAC_HUMAN Ig kappa chain C region. ! SQ NA # engineered antibody
          including humanized antibodies (chimeric proteins with human constant domains)
        4. synthetic construct [158871] (1) picpic
        5. Escherichia coli [TaxId: 562] [158872] (8) picpic
      2. Immunoglobulin light chain lambda constant domain, CL-lambda [88570]
        1. Mouse (Mus musculus) [TaxId: 10090] [88571] (21) picpic
          SQ Q8N355 20-230 # 94% sequence identity; natural chimera: antibody light chain (Fab HYB3)
        2. Human (Homo sapiens) [TaxId: 9606] [88572] (49) picpic
        3. Hamster (Cricetulus griseus) [TaxId: 10029] [88573] (1) picpic
      3. Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma [88574]
        1. Human (Homo sapiens) [TaxId: 9606] [88575] (256) picpic
          SQ Q6N089 20-243 # 95% sequence identity; natural chimera: antibody heavy chain (Fab HYB3) ! SQ NA # humanized antibody ! SQ P01857 # IGHG1_HUMAN Ig gamma-1 chain C region ! SQ NA # engineered antibody
          including humanized antibodies (chimeric proteins with human constant domains)
        2. Mouse (Mus musculus) [TaxId: 10090] [88576] (412) picpic
          SQ P01864 # GCAB_MOUSE Ig gamma-2A chain C region secreted form (B allele) ! SQ P01863 #GCAA_MOUSE Ig gamma-2A chain C region, A allele; 86% sequence identity ! SQ NA # natural chimera; best hits are: SQ P01751 (Ig heavy chain V region B1-8/186-2) and SQ P01864 (Ig gamma-2A chain C region secreted form) ! SQ P01868 # GC1_MOUSE Ig gamma-1 chain C region secreted form ! SQ P01864 # GCAB_MOUSE (P01864) Ig gamma-2A chain C region ! SQ P01837 # KAC_MOUSE (P01837) Ig kappa chain C region ! SQ P01863 # GCAA_MOUSE Ig gamma-2A chain C region, A allele ! SQ NA # part of Fab 28 against HIV-1 RT ! SQ P01868 # ! GC1_MOUSE Ig gamma-1 chain C region secreted form
        3. Mouse (Mus musculus), gamma3 [TaxId: 10090] [88577] (8) picpic
          SQ P22436 # GC3_MOUSE (P22436) Ig gamma-3 chain C region
        4. Rat (Rattus norvegicus) [TaxId: 10116] [88578] (6) picpic
        5. Hamster (Cricetulus griseus) [TaxId: 10029] [88579] (1) picpic
        6. Escherichia coli [TaxId: 562] [158873] (3) picpic
        7. synthetic construct [158874] (2) picpic
      4. Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha [88580]
        1. Mouse (Mus musculus) [TaxId: 10090] [88581] (3) picpic
      5. Immunoglobulin heavy chain mu constant domain 1, CH1-mu [88582]
        1. Human (Homo sapiens) [TaxId: 9606] [88583] (8) picpic
      6. Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma [88584]
        1. Human (Homo sapiens) [TaxId: 9606] [88585] (34) picpic
          SQ P01857 #118-327 ! SQ P01857 118-327 # GC1_HUMAN Ig gamma-1 chain C region
        2. Mouse (Mus musculus) [TaxId: 10090] [88586] (1) picpic
        3. Mouse (Mus musculus), gamma2 [TaxId: 10090] [88587] (1) picpic
        4. Rat (Rattus norvegicus) [TaxId: 10116] [88588] (2) picpic
      7. Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma [88589]
        1. Human (Homo sapiens) [TaxId: 9606] [88590] (37) picpic
          SQ P01857 #118-327 ! SQ P01857 118-327 # GC1_HUMAN Ig gamma-1 chain C region
        2. Mouse (Mus musculus) [TaxId: 10090] [88591] (2) picpic
        3. Mouse (Mus musculus), gamma2 [TaxId: 10090] [88592] (1) picpic
        4. Rat (Rattus norvegicus) [TaxId: 10116] [88593] (2) picpic
        5. Guinea pig (Cavia porcellus) [TaxId: 10141] [49123] (1) picpic
      8. Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha [89181]
        1. Human (Homo sapiens) [TaxId: 9606] [89182] (3) picpic
      9. Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha [89183]
        1. Human (Homo sapiens) [TaxId: 9606] [89184] (3) picpic
      10. Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon [88594]
        1. Human (Homo sapiens) [TaxId: 9606] [88595] (2) picpic
      11. Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon [88596]
        1. Human (Homo sapiens) [TaxId: 9606] [88597] (3) picpic
      12. Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon [88598]
        1. Human (Homo sapiens) [TaxId: 9606] [88599] (3) picpic
      13. T-cell antigen receptor [49125]
        1. Mouse (Mus musculus), alpha-chain [TaxId: 10090] [49126] (15) picpic
        2. Human (Homo sapiens), alpha-chain [TaxId: 9606] [49127] (24) picpic
        3. Mouse (Mus musculus), beta-chain [TaxId: 10090] [49128] (19) picpic
        4. Human (Homo sapiens), beta-chain [TaxId: 9606] [49129] (39) picpic
        5. Human (Homo sapiens), gamma-chain [TaxId: 9606] [63661] (3) picpic
        6. Human (Homo sapiens), delta-chain [TaxId: 9606] [63662] (3) picpic
      14. beta2-microglobulin [88600]
        1. Cow (Bos taurus) [TaxId: 9913] [48946] (1) picpic
        2. Rat (Rattus norvegicus) [TaxId: 10116] [88601] (6) picpic
        3. Human (Homo sapiens) [TaxId: 9606] [88602] (228) picpic
          SQ P61769 21-119 ! SQ P01884
        4. Mouse (Mus musculus) [TaxId: 10090] [88603] (106) picpic
          SQ P01887
      15. Class I MHC, alpha-3 domain [88604]
        1. Human (Homo sapiens) [TaxId: 9606] [88605] (189) picpic
          SQ P30685 25-300 ! SQ P30443 25-298 # 1A01_HUMAN HLA class I histocompatibility antigen, A-1 alpha chain precursor ! SQ P30481 25-300 ! SQ P01892 25-298 ! SQ P13746 25-299 # 1A11_HUMAN HLA class I histocompatibility antigen, A-11 alpha chain precursor
        2. Mouse (Mus musculus) [TaxId: 10090] [88606] (109) picpic
          SQ P01901 22-299
        3. Rat (Rattus norvegicus), RT1-AA [TaxId: 10116] [88607] (3) picpic
        4. Rhesus monkey (Macaca mulatta) [TaxId: 9544] [158875] (2) picpic
      16. Hemochromatosis protein Hfe, alpha-3 domain [88608]
        1. Human (Homo sapiens) [TaxId: 9606] [88609] (2) picpic
      17. Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain [48965]
        fat depleting factor related to class I MHC
        1. Human (Homo sapiens) [TaxId: 9606] [48966] (7) picpic
          SQ P25311 22-294
      18. Class I MHC homolog, alpha-3 domain [88610]
        gamma, delta T-cell ligand
        1. Human (Homo sapiens), Mic-a [TaxId: 9606] [48968] (2) picpic
        2. Human (Homo sapiens), Mic-b [TaxId: 9606] [74826] (1) picpic
        3. Mouse (Mus musculus), t22 [TaxId: 10090] [88611] (3) picpic
        4. Mouse (Mus musculus), t10 [TaxId: 10090] [101512] (1) picpic
      19. Fc (IgG) receptor, alpha-3 domain [88612]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [88613] (3) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [88614] (1) picpic
      20. CD1, alpha-3 domain [88615]
        1. Mouse (Mus musculus) [TaxId: 10090] [88616] (10) picpic
        2. Human (Homo sapiens), CD1b [TaxId: 9606] [88617] (3) picpic
        3. Human (Homo sapiens), CD1a [TaxId: 9606] [101513] (4) picpic
        4. Human (Homo sapiens), CD1d [TaxId: 9606] [158876] (4) picpic
          SQ P15813 202-295
      21. Class II MHC alpha chain, C-terminal domain [88618]
        1. Human (Homo sapiens), HLA-DM [TaxId: 9606] [88619] (1) picpic
          probably orthologous to the mouse H2-DM
        2. Mouse (Mus musculus), H2-DM [TaxId: 10090] [88620] (1) picpic
          probably orthologous to the human HLA-DM
        3. Human (Homo sapiens), HLA-DR group [TaxId: 9606] [88621] (29) picpic
          SQ P01903 28-207
          probably orthologous to the mouse I-E group
        4. Mouse (Mus musculus), I-E group [TaxId: 10090] [88622] (9) picpic
          probably orthologous to the human HLA-DR group
        5. Human (Homo sapiens), HLA-DQ group [TaxId: 9606] [88623] (3) picpic
          probably orthologous to the mouse I-A group
        6. Mouse (Mus musculus), I-A group [TaxId: 10090] [88624] (39) picpic
          probably orthologous to the human HLA-DQ group
      22. Class II MHC beta chain, C-terminal domain [88625]
        1. Human (Homo sapiens), HLA-DM [TaxId: 9606] [88626] (1) picpic
          probably orthologous to the mouse H2-DM
        2. Mouse (Mus musculus), H2-DM [TaxId: 10090] [88627] (1) picpic
          probably orthologous to the human HLA-DM
        3. Human (Homo sapiens), HLA-DR group [TaxId: 9606] [88628] (48) picpic
          SQ P04229 30-219
          probably orthologous to the mouse I-E group
        4. Mouse (Mus musculus), I-E group [TaxId: 10090] [88629] (9) picpic
          probably orthologous to the human HLA-DR group
        5. Human (Homo sapiens), HLA-DQ group [TaxId: 9606] [88630] (3) picpic
          probably orthologous to the mouse I-A group
        6. Mouse (Mus musculus), I-A group [TaxId: 10090] [88631] (20) picpic
          probably orthologous to the human HLA-DQ group
      23. Immunomodulatory protein m144, alpha-3 domain [110048]
        1. Murine cytomegalovirus [TaxId: 10366] [110049] (2) picpic
          SQ Q69G19 27-263 # 95% sequence identity
    3. C2 set domains [49142] (10)
      1. Vascular cell adhesion molecule-1 (VCAM-1) [49143]
        1. Human (Homo sapiens) [TaxId: 9606] [49144] (3) picpic
      2. Intercellular cell adhesion molecule-1 (ICAM-1) [49145]
        1. Human (Homo sapiens) [TaxId: 9606] [49146] (8) picpic
      3. Intercellular cell adhesion molecule-2 (ICAM-2) [49147]
        1. Human (Homo sapiens) [TaxId: 9606] [49148] (1) picpic
      4. CD4 C2-set domains [49149]
        1. Human (Homo sapiens) [TaxId: 9606] [49150] (27) picpic
        2. Rat (Rattus rattus) [TaxId: 10117] [49151] (1) picpic
      5. CD2, second domain [49152]
        1. Human (Homo sapiens) [TaxId: 9606] [49153] (1) picpic
        2. Rat (Rattus norvegicus) [TaxId: 10116] [49154] (1) picpic
      6. CD2-binding domain of CD58, second domain [49155]
        1. Human (Homo sapiens) [TaxId: 9606] [49156] (1) picpic
      7. CD80, second domain [49157]
        a soluble form of b7-1
        1. Human (Homo sapiens) [TaxId: 9606] [49158] (2) picpic
      8. Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain [141010]
        1. Human (Homo sapiens) [TaxId: 9606] [141011] (1) picpic
          SQ Q99062 26-119
    4. I set domains [49159] (53)
      1. Vascular cell adhesion molecule-1 (VCAM-1) [49160]
        1. Human (Homo sapiens) [TaxId: 9606] [49161] (3) picpic
      2. Intercellular adhesion molecule-1, ICAM-1 [49162]
        1. Human (Homo sapiens) [TaxId: 9606] [49163] (10) picpic
      3. Intercellular adhesion molecule-2, ICAM-2 [49164]
        1. Human (Homo sapiens) [TaxId: 9606] [49165] (1) picpic
      4. Neural cell adhesion molecule (NCAM) [49166]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [49167] (4) picpic
          Rat and mouse sequences are identical for the two N-terminal modules
        2. Chicken (Gallus gallus) [TaxId: 9031] [63664] (1) picpic
      5. Mucosal addressin cell adhesion molecule-1 (MADCAM-1) [49168]
        1. Human (Homo sapiens) [TaxId: 9606] [49169] (2) picpic
      6. Telokin [49170]
        1. Turkey (Meleagris gallopavo) [TaxId: 9103] [49171] (2) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [141012] (1) picpic
          SQ Q9UIT9 1238-1338
      7. Cardiac myosin binding protein C, different domains [89185]
        1. Human (Homo sapiens) [TaxId: 9606] [89186] (3) picpic
          SQ Q14896 358-451, 641-770
      8. Titin [49172]
        1. Human (Homo sapiens), different modules [TaxId: 9606] [49173] (5) picpic
      9. Twitchin [49174]
        1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [49175] (3) picpic
          different modules
        2. Human (Homo sapiens), Ig repeat 27 [TaxId: 9606] [49176] (2) picpic
      10. Type-1 interleukin-1 receptor [49177]
        duplication: tandem repeat of 3 domains
        1. Human (Homo sapiens) [TaxId: 9606] [49178] (3) picpic
      11. Fibroblast growth factor receptor, FGFR [49179]
        1. Human (Homo sapiens), FGFR1 [TaxId: 9606] [49180] (7) picpic
        2. Human (Homo sapiens), FGFR2a [TaxId: 9606] [49181] (8) picpic
        3. Human (Homo sapiens), FGFR2b [TaxId: 9606] [81955] (1) picpic
        4. Human (Homo sapiens), FGFR3c [TaxId: 9606] [101514] (1) picpic
      12. Hemolin [49182]
        Duplication: tandem repeat of 4 domains, known as L1 domains
        1. Moth (Hyalophora cecropia) [TaxId: 7123] [49183] (1) picpic
      13. Semaphorin 4d Ig-like domain [101515]
        1. Human (Homo sapiens) [TaxId: 9606] [101516] (1) picpic
      14. Axonin-1 [49184]
        tandem repeat of 4 L1 domains
        1. Chicken (Gallus gallus) [TaxId: 9031] [49185] (1) picpic
      15. Perlecan Ig3 domain [69158]
        1. Mouse (Mus musculus) [TaxId: 10090] [69159] (1) picpic
      16. Junction adhesion molecule, JAM, C-terminal domain [49186]
        1. Mouse (Mus musculus) [TaxId: 10090] [49187] (1) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [89187] (1) picpic
      17. Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain [81956]
        1. Mouse (Mus musculus) [TaxId: 10090] [81957] (1) picpic
      18. Second domain of the Flt-1 receptor [49188]
        1. Human (Homo sapiens) [TaxId: 9606] [49189] (5) picpic
      19. Tyrosine-protein kinase receptor tyro3, second domain [101517]
        1. Human (Homo sapiens) [TaxId: 9606] [101518] (1) picpic
      20. High affinity nerve growth factor receptor TrkA, different domains [49190]
        1. Human (Homo sapiens) [TaxId: 9606] [49191] (7) picpic
      21. Ligand binding domain of trkB receptor [49192]
        1. Human (Homo sapiens) [TaxId: 9606] [49193] (2) picpic
      22. NT3 binding domain of trkC receptor [49194]
        1. Human (Homo sapiens) [TaxId: 9606] [49195] (1) picpic
      23. Fc gamma receptor ectodomain (CD32) [49196]
        possibly an intermediate structure between the I set and FnIII domains
        1. Human (Homo sapiens), IIa [TaxId: 9606] [49197] (2) picpic
        2. Human (Homo sapiens), IIb [TaxId: 9606] [49198] (1) picpic
        3. Human (Homo sapiens), III [TaxId: 9606] [49199] (5) picpic
          SQ O75015 23-189
      24. IgE high affinity receptor alpha subunit [49200]
        possibly an intermediate structure between the I set and FnIII domains
        1. Human (Homo sapiens) [TaxId: 9606] [49201] (7) picpic
          SQ P12319 29-196
      25. Ig alpha Fc receptor, FCARI (CD89) [89188]
        possibly an intermediate structure between the I set and FnIII domains
        1. Human (Homo sapiens) [TaxId: 9606] [89189] (3) picpic
      26. Killer cell inhibitory receptor [49202]
        possibly an intermediate structure between the I set and FnIII domains
        1. Human (Homo sapiens), kir2dl3 [TaxId: 9606] [49203] (2) picpic
        2. Human (Homo sapiens), kir2ds3, CD158j [TaxId: 9606] [89190] (1) picpic
        3. Human (Homo sapiens), p58-cl42 kir [TaxId: 9606] [49204] (2) picpic
        4. Human (Homo sapiens), 2dl2 [TaxId: 9606] [49205] (2) picpic
      27. Ligand binding domain of lir-1 (ilt2) [49206]
        possibly an intermediate structure between the I set and FnIII domains
        1. Human (Homo sapiens) [TaxId: 9606] [49207] (8) picpic
          SQ Q8NHL6 25-218
      28. Ligand binding domain of NK receptor NKp46 [101519]
        possibly an intermediate structure between the I set and FnIII domains
        1. Human (Homo sapiens) [TaxId: 9606] [101520] (2) picpic
      29. The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain [63665]
        1. Human (Homo sapiens) [TaxId: 9606] [63666] (7) picpic
      30. Interleukin-6 receptor alpha chain, N-terminal domain [81958]
        1. Human (Homo sapiens) [TaxId: 9606] [81959] (1) picpic
      31. CD3 gamma chain ectodomain fragment [69160]
        possibly an intermediate structure between the I set and FnIII domains
        1. Mouse (Mus musculus) [TaxId: 10090] [69161] (1) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [110050] (1) picpic
          SQ P09693 # CD3G_HUMAN T-cell surface glycoprotein CD3 gamma chain precursor
      32. CD3 epsilon chain ectodomain fragment [69162]
        possibly an intermediate structure between the I set and FnIII domains
        1. Mouse (Mus musculus) [TaxId: 10090] [69163] (2) picpic
          SQ P22646 22-100
        2. Human (Homo sapiens) [TaxId: 9606] [110051] (2) picpic
          SQ P07766 33-123 ! SQ P07766 # CD3E_HUMAN T-cell surface glycoprotein CD3 epsilon chain precursor
        3. Sheep (Ovis aries) [TaxId: 9940] [117040] (1) picpic
          SQ P18438 22-88
      33. B and T lymphocyte attenuator, Btla [117041]
        1. Mouse (Mus musculus) [TaxId: 10090] [117042] (1) picpic
          SQ Q7TSA3 40-143
      34. CD3 delta chain ectodomain fragment [117043]
        1. Human (Homo sapiens) [TaxId: 9606] [117044] (1) picpic
          SQ P04234 23-95
      35. Myosin-binding protein C, slow-type [141013]
        1. Human (Homo sapiens) [TaxId: 9606] [141014] (2) picpic
          SQ Q00872 342-431! SQ Q00872 58-170
      36. Receptor-type tyrosine-protein phosphatase mu [141015]
        1. Human (Homo sapiens) [TaxId: 9606] [141016] (1) picpic
          SQ P28827 184-279
      37. Cervical EMMPRIN [158877]
        contains two Ig-domains in the N-terminal part
        1. Human (Homo sapiens) [TaxId: 9606] [158878] (8) picpic
          SQ Q54A51 103-203! SQ Q54A51 23-102
      38. Ligand binding domain of lir-2 (ilt4) [158879]
        1. Human (Homo sapiens) [TaxId: 9606] [158880] (2) picpic
          SQ Q8N423 120-218! SQ Q8N423 26-109
  2. E set domains [81296] (23)
    "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies
    link to SUPERFAMILY database - Superfamily
    1. NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain [81279] (10)
      subgroup of the larger IPT/TIG domain family
      1. T-cell transcription factor NFAT1 (NFATC2) [49246]
        1. Human (Homo sapiens) [TaxId: 9606] [49247] (10) picpic
      2. T-cell transcription factor NFAT5 (TONEBP) [69170]
        1. Human (Homo sapiens) [TaxId: 9606] [69171] (1) picpic
      3. p50 subunit of NF-kappa B transcription factor [49248]
        1. Human (Homo sapiens) [TaxId: 9606] [49249] (9) picpic
          SQ P25799 245-350
        2. Mouse (Mus musculus) [TaxId: 10090] [49250] (10) picpic
      4. p52 subunit of NF-kappa B (NFKB) [49251]
        1. Human (Homo sapiens) [TaxId: 9606] [49252] (1) picpic
      5. p65 subunit of NF-kappa B (NFKB), dimerization domain [49253]
        1. Mouse (Mus musculus) [TaxId: 10090] [49254] (10) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [49255] (4) picpic
        3. Chicken (Gallus gallus), C-rel [TaxId: 9031] [74848] (1) picpic
      6. DNA-binding protein LAG-1 (CSL) [110052]
        1. Caenorhabditis elegans [TaxId: 6239] [110053] (4) picpic
          SQ Q9TYY1 195-660
      7. Calmodulin binding transcription activator 1 [141017]
        this domain is in the middle of long protein chain
        1. Human (Homo sapiens) [TaxId: 9606] [141018] (5) picpic
          SQ Q9Y6Y1 872-953
    2. E-set domains of sugar-utilizing enzymes [81282] (30)
      domains of unknown function associated with different type of catalytic domains in a different sequential location
      subgroup of the larger IPT/TIG domain family
      1. Galactose oxidase, C-terminal domain [49209]
        follows the catalytic seven-bladed beta-propeller domain
        1. Dactylium dendroides [TaxId: 5132] [49210] (8) picpic
          SQ Q01745 42-680
        2. Fungi (Fusarium sp.) [TaxId: 29916] [69164] (1) picpic
          sequence identical to that of Dactylium dendroides
        3. Fusarium graminearum (Gibberella zeae) [TaxId: 5518] [158881] (3) picpic
      2. Sialidase, "linker" domain [49237]
        follows the catalytic six-bladed beta-propeller domain
        1. Micromonospora viridifaciens [TaxId: 1881] [49238] (8) picpic
          SQ Q02834 47-647
      3. CelD cellulase, N-terminal domain [49231]
        precedes the catalytic alpha6/alpha6 domain
        1. Clostridium thermocellum [TaxId: 1515] [49232] (1) picpic
      4. Cellulose 1,4-beta-cellobiosidase CbhA, precatalytic domain [101521]
        1. Clostridium thermocellum [TaxId: 1515] [101522] (2) picpic
      5. Hyaluronate lyase precatalytic domain [69167]
        precedes the catalytic incomplete alpha5/alpha5 barrel
        a rudiment form of Ig-like domain
        1. Streptococcus agalactiae [TaxId: 1311] [69168] (3) picpic
      6. Bacterial chitobiase (N-acetyl-beta-glucoseaminidase), C-terminal domain [49211]
        rudiment form of Ig-like domain; follows the catalytic (beta/alpha)8-barrel domain; family 20 glycosyl hydrolases
        1. Serratia marcescens [TaxId: 615] [49212] (4) picpic
      7. Cyclomaltodextrin glycanotransferase, domain D [49215]
        follows the starch-binding domain C; the catalytic domain A has (beta/alpha)8-barrel fold; family 13 glycosyl hydrolases
        1. Bacillus circulans, different strains [TaxId: 1397] [49216] (36) picpic
        2. Bacillus stearothermophilus [TaxId: 1422] [49217] (1) picpic
        3. Bacillus sp., strain 1011 [TaxId: 1409] [49219] (8) picpic
          SQ P05618
        4. Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950] [49220] (2) picpic
        5. Thermoanaerobacterium [TaxId: 28895] [158882] (2) picpic
      8. Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D [81280]
        domain architecture similar to cyclomaltodextrin glycosylhydrolases
        1. Bacillus stearothermophilus [TaxId: 1422] [81281] (2) picpic
      9. Maltogenic amylase, N-terminal domain N [49221]
        precedes the catalytic (beta/alpha)8-barrel domain
        1. Thermus sp. [TaxId: 275] [49222] (2) picpic
        2. Bacillus sp., cyclomaltodextrinase [TaxId: 1409] [74842] (1) picpic
        3. Thermoactinomyces vulgaris, TVAI [TaxId: 2026] [74843] (9) picpic
        4. Thermoactinomyces vulgaris, TVAII [TaxId: 2026] [49223] (25) picpic
      10. Neopullulanase, N-terminal domain [81960]
        homologous to maltogenic amylase
        1. Bacillus stearothermophilus [TaxId: 1422] [81961] (4) picpic
      11. Cyclomaltodextrinase, N-terminal domain [101523]
        protein shares similar domain organization with maltogenic amylases but differs in the spatial arrangement of its domains
        1. Flavobacterium sp. 92 [TaxId: 197856] [101524] (1) picpic
      12. Isoamylase, N-terminal domain N [49226]
        elaborated with a few large insertions in the common fold
        precedes the catalytic (beta/alpha)8-barrel domain, the domain architecture similar to maltogenic amylases
        1. Pseudomonas amyloderamosa [TaxId: 32043] [49227] (1) picpic
      13. Glycosyltrehalose trehalohydrolase, N-terminal domain N [49224]
        domain architecture similar to isoamylase
        1. Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287] [49225] (2) picpic
        2. Deinococcus radiodurans [TaxId: 1299] [141019] (9) picpic
          SQ Q9RX51 14-110
      14. 1,4-alpha-glucan branching enzyme, N-terminal domain N [81962]
        domain architecture similar to isoamylase
        1. Escherichia coli [TaxId: 562] [81963] (1) picpic
      15. Chitinase A, N-terminal domain N [49233]
        precedes the catalytic (beta/alpha)8-barrel domain
        1. Serratia marcescens [TaxId: 615] [49234] (11) picpic
          SQ P07254 24-563
      16. Glucodextranase, domain B [101525]
        1. Arthrobacter globiformis [TaxId: 1665] [101526] (2) picpic
      17. Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain [110054]
        1. Escherichia coli [TaxId: 562] [110055] (1) picpic
          SQ P33136 23-511
      18. Chitin-binding protein CBP21 [117045]
        member of Pfam 03067; elaborated fold with a large insertion between strands A and A'
        1. Serratia marcescens [TaxId: 615] [117046] (2) picpic
          SQ O83009 28-197
      19. Beta-1,4-mannanase domain 2 (postcatalytic) [141020]
        1. Cellulomonas fimi [TaxId: 1708] [141021] (3) picpic
          SQ Q9XCV5 421-514
      20. Pullulanase PulA [158883]
        contains two E-set domains in tandem
        1. Klebsiella pneumoniae [TaxId: 573] [158884] (6) picpic
          SQ P07206 170-294! SQ P07206 295-409
    3. Other IPT/TIG domains [89191] (1)
      apart from the domains of transcription factors and sugar-utilizing enzymes
      1. Exocyst complex component Sec5, Ral-binding domain [89192]
        1. Mouse (Mus musculus) [TaxId: 10090] [89193] (2) picpic
    4. Arthropod hemocyanin, C-terminal domain [81283] (2)
      1. Arthropod hemocyanin, C-terminal domain [49228]
        elaborated with many loop insertions in the common fold
        1. Horseshoe crab (Limulus polyphemus) [TaxId: 6850] [49229] (4) picpic
        2. Spiny lobster (Panulirus interruptus) [TaxId: 6735] [49230] (7) picpic
    5. Class II viral fusion proteins C-terminal domain [81284] (6)
      1. Envelope glycoprotein [49213]
        1. Tick-borne encephalitis virus [TaxId: 11084] [49214] (2) picpic
        2. Dengue virus type 2 [TaxId: 11060] [89194] (12) picpic
          SQ P12823 281-675 # 99% sequence identity
        3. Japanese encephalitis virus [TaxId: 11072] [101527] (1) picpic
        4. West Nile virus [TaxId: 11082] [110056] (5) picpic
          SQ Q8JU42 586-696
        5. Langat virus [TaxId: 11085] [141022] (2) picpic
          SQ P29838 583-765
      2. Fusion glycoprotein E1 [74840]
        1. Semliki forest virus [TaxId: 11033] [74841] (5) picpic
    6. Cytomegalovirus protein US2 [81285] (1)
      1. Cytomegalovirus protein US2 [63668]
        similar to both C1 and C2 set
        1. Human cytomegalovirus [TaxId: 10359] [63669] (1) picpic
    7. Molybdenum-containing oxidoreductases-like dimerisation domain [81286] (2)
      1. Sulfite oxidase, C-terminal domain [49259]
        1. Chicken (Gallus gallus) [TaxId: 9031] [49260] (5) picpic
        2. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [101528] (1) picpic
    8. ML domain [81287] (3)
      implicated in lipid recognition, particularly in the recognition of pathogen related products
      1. Epididymal secretory protein E1 (Niemann-Pick C2 protein) [81964]
        a cholesterol binding protein
        1. Cow (Bos taurus) [TaxId: 9913] [81965] (4) picpic
      2. Major mite allergen [49256]
        contains additional N-terminal strand
        1. House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954] [49257] (8) picpic
          SQ Q00855 18-146
        2. House-dust mite (Dermatophagoides pteronyssinus), Der p 2 [TaxId: 6956] [49258] (2) picpic
    9. RhoGDI-like [81288] (3)
      1. Rho GDP-dissociation inhibitor 1, RhoGDI [49241]
        1. Human (Homo sapiens) [TaxId: 9606] [49242] (17) picpic
        2. Cow (Bos taurus) [TaxId: 9913] [49243] (4) picpic
      2. GMP-PDE delta [74846]
        1. Human (Homo sapiens) [TaxId: 9606] [74847] (3) picpic
    10. Cytoplasmic domain of inward rectifier potassium channel [81966] (3)
      1. G protein-gated inward rectifier Girk1 [81967]
        forms tetrameric cytoplasmic pore; contains a C-terminal extension
        1. Mouse (Mus musculus) [TaxId: 10090] [81968] (1) picpic
      2. Inward rectifier potassium channel Kirbac1.1 [89195]
        1. Burkholderia pseudomallei [TaxId: 28450] [89196] (1) picpic
      3. Inward rectifier potassium channel kirbac3.1 [117047]
        1. Magnetospirillum magnetotacticum [TaxId: 188] [117048] (2) picpic
          SQ Q8YY97 # 46% sequence identity; Anabaena sp. PCC 7120 TaxID: 103690
    11. Transglutaminase N-terminal domain [81289] (4)
      1. Transglutaminase N-terminal domain [49235]
        elaborated with many loop insertions in the common fold
        1. Human (Homo sapiens), blood isozyme [TaxId: 9606] [49236] (8) picpic
          Coagulation factor XIII
        2. Human (Homo sapiens), tissue isozyme [TaxId: 9606] [74844] (2) picpic
          GDP-binding protein
        3. Human (Homo sapiens), TGase E3 [TaxId: 9606] [74845] (8) picpic
        4. Red sea bream (Chrysophrys major) [TaxId: 143350] [63667] (1) picpic
    12. Filamin repeat (rod domain) [81290] (4)
      Pfam 00630
      1. F-actin cross-linking gelation factor (ABP-120) repeats [49239]
        1. Dictyostelium discoideum [TaxId: 44689] [49240] (3) picpic
          SQ P13466 547-857
      2. Filamin C [117049]
        1. Human (Homo sapiens) [TaxId: 9606] [117050] (7) picpic
          SQ Q14315 2633-2725
      3. Filamin a [141023]
        1. Human (Homo sapiens) [TaxId: 9606] [141024] (8) picpic
          SQ P21333 1863-1953! SQ P21333 1863-1955! SQ P21333 2236-2328
      4. Filamin b [141025]
        1. Human (Homo sapiens) [TaxId: 9606] [141026] (14) picpic
          SQ O75369 1017-1134! SQ O75369 1130-1229! SQ O75369 1215-1329! SQ O75369 1325-1442! SQ O75369 1418-1518! SQ O75369 1611-1721! SQ O75369 1899-2001! SQ O75369 1999-2096! SQ O75369 2104-2192
    13. Arrestin/Vps26-like [81291] (2)
      1. Arrestin [49244]
        duplication: contains tandem repeat of two elaborated Ig-like domains contacting each other head-to-head
        1. Cow (Bos taurus), visual arrestin [TaxId: 9913] [49245] (2) picpic
        2. Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913] [69169] (5) picpic
    14. Gingipain R (RgpB), C-terminal domain [81292] (1)
      1. Gingipain R (RgpB), C-terminal domain [49261]
        Arginine-specific cysteine proteinase
        follows the catalytic alpha/beta domains
        1. Porphyromonas gingivalis [TaxId: 837] [49262] (1) picpic
    15. Copper resistance protein C (CopC, PcoC) [81969] (2)
      1. Copper resistance protein C (CopC, PcoC) [81970]
        1. Pseudomonas syringae [TaxId: 317] [81971] (7) picpic
        2. Escherichia coli [TaxId: 562] [81972] (2) picpic
    16. Cellulosomal scaffoldin protein CipC, module x2.1 [81293] (1)
      1. Cellulosomal scaffoldin protein CipC, module x2.1 [49263]
        1. Clostridium cellulolyticum [TaxId: 1521] [49264] (1) picpic
    17. Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 [81294] (2)
      1. Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 [69176]
        duplication: tandem repeat of two Ig-like domains
        1. Paracoccus denitrificans [TaxId: 266] [69177] (2) picpic
        2. Pseudomonas putida [TaxId: 303] [69178] (2) picpic
    18. Internalin Ig-like domain [81295] (3)
      truncated fold fused to an LRR domain
      1. Internalin A [81973]
        1. Listeria monocytogenes [TaxId: 1639] [81974] (7) picpic
      2. Internalin B [69172]
        1. Listeria monocytogenes [TaxId: 1639] [69173] (5) picpic
      3. Internalin H [69174]
        1. Listeria monocytogenes [TaxId: 1639] [69175] (1) picpic
    19. SoxZ-like [141027] (1)
      1. Sulfur oxidation protein SoxZ [141028]
        1. Thermus thermophilus [TaxId: 274] [141029] (2) picpic
          SQ Q5SME6 2-107
          TTHA1420
    20. Enterochelin esterase N-terminal domain-like [141030] (2)
      PfamB 013071
      1. Enterochelin esterase [141031]
        1. Shigella flexneri [TaxId: 623] [141032] (1) picpic
          SQ Q83SB9 3-150
        2. Shigella flexneri 2a str. 2457T [TaxId: 198215] [158885] (10) picpic
    21. AMPK-beta glycogen binding domain-like [158886] (3)
      lacks the N-terminal strand (A) and contains a beta-hairpin insertion in the C-terminal strand (G)
      1. 5'-AMP-activated protein kinase subunit beta-2 [158887]
        1. Human (Homo sapiens) [TaxId: 9606] [158888] (1) picpic
          SQ O43741 75-163
      2. SIP2 [158889]
        1. Saccharomyces cerevisiae [TaxId: 4932] [158890] (2) picpic
          SQ P34164 161-247
      3. 5'-AMP-activated protein kinase subunit beta-1 [158891]
        1. Rattus norvegicus [TaxId: 10116] [158892] (6) picpic
          SQ P80386 76-162
    22. Sec63 C-terminal domain-like [158893] (1)
      C-terminal part of Pfam 02889
      1. Protein pro2281 [158894]
        1. Human (Homo sapiens) [TaxId: 9606] [158895] (1) picpic
          SQ Q9P172 209-322
    23. SVA-like [158896] (1)
      Pfam 05326
      1. Prolactin-inducible protein, PIP [158897]
        1. Human (Homo sapiens) [TaxId: 9606] [158898] (1) picpic
          SQ P12273 29-146
  3. Fibronectin type III [49265] (1)
    link to SUPERFAMILY database - Superfamily
    1. Fibronectin type III [49266] (53)
      Pfam 00041
      1. Extracellular region of human tissue factor [49267]
        tandem of fibronectin type III domains
        1. Human (Homo sapiens) [TaxId: 9606] [49268] (13) picpic
          SQ P13726 33-242
        2. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [49269] (35) picpic
      2. Fibronectin, different Fn3 modules [49270]
        1. Human (Homo sapiens) [TaxId: 9606] [49271] (9) picpic
        2. Mouse (Mus musculus) [TaxId: 10090] [49272] (2) picpic
        3. Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333] [158899] (1) picpic
      3. Tenascin [49273]
        1. Chicken (Gallus gallus) [TaxId: 9031] [49274] (1) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [49275] (1) picpic
        3. Rat (Rattus norvegicus) [TaxId: 10116] [110057] (1) picpic
          SQ Q05546 502-770
      4. Neuroglian, two amino proximal Fn3 repeats [49276]
        tandem of fibronectin type III domains
        1. Drosophila melanogaster [TaxId: 7227] [49277] (1) picpic
      5. Neural cell adhesion molecule 1, NCAM [89197]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [89198] (1) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [141033] (17) picpic
          SQ P13592 498-598
      6. Fibronectin type III domain from chitinase A1. [81975]
        1. Bacillus circulans [TaxId: 1397] [81976] (1) picpic
      7. Integrin beta-4 subunit [49278]
        1. Human (Homo sapiens) [TaxId: 9606] [49279] (1) picpic
      8. Growth hormone receptor [49280]
        1. Human (Homo sapiens) [TaxId: 9606] [49281] (10) picpic
          tandem of fibronectin type III domains
      9. Erythropoietin (EPO) receptor [49282]
        1. Human (Homo sapiens) [TaxId: 9606] [49283] (5) picpic
        2. Escherichia coli [TaxId: 562] [158900] (6) picpic
      10. Prolactin receptor [49284]
        1. Human (Homo sapiens) [TaxId: 9606] [49285] (3) picpic
        2. Rat (Rattus norvegicus) [TaxId: 10116] [49286] (1) picpic
      11. Interleukin-4 receptor alpha chain [49287]
        1. Human (Homo sapiens) [TaxId: 9606] [49288] (1) picpic
      12. Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors [49289]
        duplication: consists of four similar domains; dimerizes by swapping the C-terminal strands of domains 1 and 3
        1. Human (Homo sapiens) [TaxId: 9606] [49290] (11) picpic
      13. Granulocyte colony-stimulating factor (GC-SF) receptor [49291]
        1. Mouse (Mus musculus) [TaxId: 10090] [49292] (4) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [141034] (2) picpic
          SQ Q99062 120-226! SQ Q99062 227-331
      14. Interferon-gamma receptor alpha chain [49293]
        1. Human (Homo sapiens) [TaxId: 9606] [49294] (3) picpic
      15. Cytokine receptor gp130 cytokine-binding domains [49295]
        1. Human (Homo sapiens) [TaxId: 9606] [49296] (5) picpic
      16. Interleukin-10 receptor 1, IL-10R1 [63670]
        1. Human (Homo sapiens) [TaxId: 9606] [63671] (8) picpic
      17. Type I titin module [49297]
        1. Human (Homo sapiens) [TaxId: 9606] [49298] (1) picpic
      18. The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 [63672]
        1. Human (Homo sapiens) [TaxId: 9606] [63673] (12) picpic
      19. Interleukin-6 receptor alpha chain, domains 2 and 3 [81977]
        1. Human (Homo sapiens) [TaxId: 9606] [81978] (3) picpic
      20. Interferon-alpha/beta receptor beta chain [89199]
        1. Human (Homo sapiens) [TaxId: 9606] [89200] (4) picpic
      21. KIAA1568 protein [101529]
        1. Human (Homo sapiens) [TaxId: 9606] [101530] (2) picpic
      22. KIAA0343 protein [101531]
        1. Human (Homo sapiens) [TaxId: 9606] [101532] (2) picpic
      23. KIAA1355 [110058]
        1. Human (Homo sapiens) [TaxId: 9606] [110059] (1) picpic
          SQ Q9P2J2 [Fragment] 634-728
      24. Ciliary neurotrophic factor receptor alpha [110060]
        1. Human (Homo sapiens) [TaxId: 9606] [110061] (1) picpic
          SQ P26992 202-305
      25. Host cell factor 2, HCF-2 [117051]
        1. Mouse (Mus musculus) [TaxId: 10090] [117052] (1) picpic
          SQ Q9D968 127-236
      26. Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 [117053]
        1. Mouse (Mus musculus) [TaxId: 10090] [117054] (1) picpic
          SQ Q9DAM9 1-107
      27. Contactin 3 (KIAA1496) [117055]
        1. Human (Homo sapiens) [TaxId: 9606] [117056] (1) picpic
          SQ Q9P232 893-996
      28. Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) [117057]
        1. Human (Homo sapiens) [TaxId: 9606] [117058] (6) picpic
          SQ Q9Y2H6 192-315
      29. Ephrin type-B receptor 1 [141035]
        1. Human (Homo sapiens) [TaxId: 9606] [141036] (1) picpic
          SQ P54762 434-528
      30. Brother of CDO precursor (BOC) [141037]
        1. Mouse (Mus musculus) [TaxId: 10090] [141038] (2) picpic
          SQ Q6AZB0 591-689! SQ Q6AZB0 707-807
      31. Ephrin type-A receptor 8 [141039]
        1. Human (Homo sapiens) [TaxId: 9606] [141040] (1) picpic
          SQ P29322 473-534
          structure of the C-terminal SAM domain is known (scop_sp 101243)
      32. Cytokine receptor common gamma chain [141041]
        1. Human (Homo sapiens) [TaxId: 9606] [141042] (8) picpic
          SQ P31785 142-246! SQ P31785 142-248! SQ P31785 54-141! SQ P31785 56-141
      33. Rim binding protein 2 [141043]
        1. Human (Homo sapiens) [TaxId: 9606] [141044] (1) picpic
          SQ O15034 477-593
      34. Tenascin-X [141045]
        1. Human (Homo sapiens) [TaxId: 9606] [141046] (3) picpic
          SQ P22105 3699-3798! SQ P22105 3890-3991! SQ P22105 3977-4069
      35. Interleukin-2 receptor beta chain [141047]
        1. Human (Homo sapiens) [TaxId: 9606] [141048] (6) picpic
          SQ P14784 130-232! SQ P14784 130-233! SQ P14784 32-129
      36. Receptor-type tyrosine-protein phosphatase delta, PTPRD [141049]
        1. Human (Homo sapiens) [TaxId: 9606] [141050] (1) picpic
          SQ P23468 504-607
      37. Sidekick 2 [141051]
        1. Human (Homo sapiens) [TaxId: 9606] [141052] (4) picpic
          SQ Q58EX2 1279-1395! SQ Q58EX2 578-685! SQ Q58EX2 881-988! SQ Q58EX2 981-1081
      38. Neogenin [141053]
        1. Human (Homo sapiens) [TaxId: 9606] [141054] (6) picpic
          SQ Q92859 429-535! SQ Q92859 529-631! SQ Q92859 623-741! SQ Q92859 718-830! SQ Q92859 853-952! SQ Q92859 942-1054
      39. Down syndrome cell adhesion molecule-like protein 1, DSCAML1 [141055]
        1. Human (Homo sapiens) [TaxId: 9606] [141056] (1) picpic
          SQ Q8TD84 979-1087
      40. Myosin binding protein C, fast-type [141057]
        1. Mouse (Mus musculus) [TaxId: 10090] [141058] (1) picpic
          SQ Q5XKE0 731-828
      41. Receptor-type tyrosine-protein phosphatase F, PTPRF [141059]
        1. Human (Homo sapiens) [TaxId: 9606] [141060] (1) picpic
          SQ P10586 811-904
      42. Hedgehog receptor iHog [141061]
        Cg9211-PA
        1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [141062] (12) picpic
          SQ Q9VM64 466-572! SQ Q9VM64 573-667
      43. Ephrin type-A receptor 1 [141063]
        1. Mouse (Mus musculus) [TaxId: 10090] [141064] (1) picpic
          SQ Q60750 446-539
      44. Insulin receptor [158901]
        1. Human (Homo sapiens) [TaxId: 9606] [158902] (3) picpic
          SQ P06213 495-618
  4. PKD domain [49299] (1)
    link to SUPERFAMILY database - Superfamily
    1. PKD domain [49300] (3)
      Pfam 00801
      1. Polycystein-1, PKD-1 [49301]
        1. Human (Homo sapiens) [TaxId: 9606] [49302] (1) picpic
      2. Surface layer protein [81979]
        1. Archaeon Methanosarcina mazei [TaxId: 2209] [81980] (1) picpic
      3. VPS10 domain-containing receptor SorCS2 [117059]
        1. Human (Homo sapiens) [TaxId: 9606] [117060] (1) picpic
          SQ Q96PQ0 760-869
  5. beta-Galactosidase/glucuronidase domain [49303] (1)
    link to SUPERFAMILY database - Superfamily
    1. beta-Galactosidase/glucuronidase domain [49304] (5)
      1. beta-Galactosidase, domains 2 and 4 [49305]
        1. Escherichia coli [TaxId: 562] [49306] (25) picpic
          SQ P00722
        2. Arthrobacter sp. c2-2 [TaxId: 192168] [141065] (12) picpic
          SQ Q8KRF6 220-312! SQ Q8KRF6 610-721
      2. beta-Glucuronidase [49307]
        1. Human (Homo sapiens) [TaxId: 9606] [49308] (1) picpic
      3. Exochitosanase CsxA, domains 2, 4 and 5 [158903]
        1. Amycolatopsis orientalis [TaxId: 31958] [158904] (6) picpic
          SQ Q56F26 226-335! SQ Q56F26 675-777! SQ Q56F26 778-899
      4. Beta-mannosidase, domains 2, 4 and 5 [158905]
        truncated domain 5 lacks the last strand
        1. Bacteroides thetaiotaomicron [TaxId: 818] [158906] (54) picpic
          SQ Q8AAK6 220-330! SQ Q8AAK6 679-783! SQ Q8AAK6 784-864
  6. Transglutaminase, two C-terminal domains [49309] (1)
    link to SUPERFAMILY database - Superfamily
    1. Transglutaminase, two C-terminal domains [49310] (4)
      1. Transglutaminase, two C-terminal domains [49311]
        duplication
        1. Human (Homo sapiens), blood isozyme [TaxId: 9606] [49312] (8) picpic
          Coagulation factor XIII,
        2. Human (Homo sapiens), tissue isozyme [TaxId: 9606] [74849] (3) picpic
          GDP-binding protein
        3. Human (Homo sapiens), TGase E3 [TaxId: 9606] [74850] (8) picpic
        4. Red sea bream (Chrysophrys major) [TaxId: 143350] [63674] (1) picpic
  7. Cadherin-like [49313] (2)
    link to SUPERFAMILY database - Superfamily
    1. Cadherin [49314] (4)
      1. N-cadherin (neural) [49315]
        1. Mouse (Mus musculus) [TaxId: 10090] [49316] (7) picpic
      2. E-cadherin (epithelial) [49317]
        synonym: uvomorulin
        1. Mouse (Mus musculus) [TaxId: 10090] [49318] (5) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [81981] (7) picpic
      3. C-cadherin ectodomain [74851]
        five-domain fragment
        1. African clawed frog (Xenopus laevis) [TaxId: 8355] [74852] (1) picpic
    2. Dystroglycan, N-terminal domain [110062] (1)
      1. Dystroglycan, N-terminal domain [110063]
        1. Mouse (Mus musculus) [TaxId: 10090] [110064] (1) picpic
          SQ Q62165 58-303
  8. Actinoxanthin-like [49319] (1)
    link to SUPERFAMILY database - Superfamily
    1. Actinoxanthin-like [49320] (5)
      1. Macromycin [49321]
        1. Streptomyces macromomyceticus [TaxId: 1917] [49322] (1) picpic
      2. Neocarzinostatin [49323]
        1. Streptomyces carzinostaticus [TaxId: 1897] [49324] (7) picpic
      3. Actinoxanthin [49325]
        1. Actinomyces globisporus, number 1131 [TaxId: 1908] [49326] (1) picpic
      4. Antitumor antibiotic C-1027 [63675]
        1. Streptomyces globisporus [TaxId: 1908] [63676] (3) picpic
      5. Kedarcidin [49327]
        1. Actinomycete ATCC 53650, strain L585-6 [TaxId: 38989] [49328] (1) picpic
  9. Cu,Zn superoxide dismutase-like [49329] (1)
    has additional strand at N-terminus
    link to SUPERFAMILY database - Superfamily
    1. Cu,Zn superoxide dismutase-like [49330] (13)
      1. Cu,Zn superoxide dismutase, SOD [49331]
        1. Cow (Bos taurus) [TaxId: 9913] [49332] (27) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [49333] (32) picpic
        3. African clawed frog (Xenopus laevis) [TaxId: 8355] [49334] (1) picpic
        4. Spinach (Spinacia oleracea) [TaxId: 3562] [49335] (1) picpic
        5. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [49336] (12) picpic
        6. Photobacterium leiognathi [TaxId: 553611] [49337] (9) picpic
        7. Escherichia coli [TaxId: 562] [49338] (1) picpic
          Monomeric enzyme
        8. Salmonella typhimurium [TaxId: 90371] [49339] (1) picpic
        9. Actinobacillus pleuropneumoniae [TaxId: 715] [49340] (1) picpic
        10. Mycobacterium tuberculosis [TaxId: 1773] [110065] (1) picpic
          SQ P96278
        11. Blood fluke (Schistosoma mansoni) [TaxId: 6183] [110066] (2) picpic
          SQ Q01137
      2. Copper chaperone for superoxide dismutase, C-terminal domain [49341]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [49342] (3) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [49343] (1) picpic
  10. CBD9-like [49344] (3)
    has additional strand at N-terminus; the active site in a similar topological location as the Cu,Zn SOD site
    link to SUPERFAMILY database - Superfamily
    1. Cytochrome domain of cellobiose dehydrogenase [49345] (1)
      1. Cytochrome domain of cellobiose dehydrogenase [49346]
        1. Fungus (Phanerochaete chrysosporium) [TaxId: 5306] [49347] (4) picpic
    2. Family 9 carbohydrate-binding module, CBD9 [63677] (1)
      1. Xylanase 10A [63678]
        1. Thermotoga maritima [TaxId: 2336] [63679] (3) picpic
    3. Glucodextranase, domain C [101533] (1)
      1. Glucodextranase, domain C [101534]
        1. Arthrobacter globiformis [TaxId: 1665] [101535] (2) picpic
  11. Lamin A/C globular tail domain [74853] (1)
    link to SUPERFAMILY database - Superfamily
    1. Lamin A/C globular tail domain [74854] (2)
      1. Lamin A/C globular tail domain [74855]
        1. Human (Homo sapiens) [TaxId: 9606] [74856] (2) picpic
        2. Mouse (Mus musculus) [TaxId: 10090] [110067] (1) picpic
          SQ P48678 408-546
  12. Clathrin adaptor appendage domain [49348] (3)
    contains an additional N-terminal strand
    link to SUPERFAMILY database - Superfamily
    1. Alpha-adaptin ear subdomain-like [49349] (2)
      ear domain consists of two different subdomains
      1. Alpha-adaptin AP2 ear domain, N-terminal subdomain [49350]
        1. Mouse (Mus musculus) [TaxId: 10090] [49351] (10) picpic
          SQ P17427 694-938 # 98% sequence identity
      2. Beta2-adaptin AP2 ear domain, N-terminal subdomain [49352]
        1. Human (Homo sapiens) [TaxId: 9606] [49353] (5) picpic
    2. gamma-adaptin C-terminal appendage domain-like [74857] (3)
      consist of a single subdomain
      1. Gamma1-adaptin domain [74858]
        1. Human (Homo sapiens) [TaxId: 9606] [74859] (5) picpic
      2. ADP-ribosylation factor binding protein Gga1 domain [89201]
        1. Human (Homo sapiens) [TaxId: 9606] [89202] (10) picpic
      3. ADP-ribosylation factor binding protein Gga3 domain [89203]
        1. Human (Homo sapiens) [TaxId: 9606] [89204] (1) picpic
    3. Coatomer appendage domain [101536] (2)
      1. Coatomer gamma subunit C-terminal domain, first subdomain [101537]
        1. Human (Homo sapiens) [TaxId: 9606] [101538] (1) picpic
        2. Cow (Bos taurus) [TaxId: 9913] [101539] (1) picpic
  13. Integrin domains [69179] (1)
    link to SUPERFAMILY database - Superfamily
    1. Integrin domains [69180] (2)
      1. Thigh, calf-1 and calf-2 domains of integrin alpha [69181]
        1. Human (Homo sapiens) [TaxId: 9606] [69182] (4) picpic
          SQ P06756 31-986
      2. Hybrid domain of integrin beta [69183]
        1. Human (Homo sapiens) [TaxId: 9606] [69184] (5) picpic
          SQ P05106 27-466
  14. PapD-like [49354] (2)
    contains PP switch between strands D and C'
    link to SUPERFAMILY database - Superfamily
    1. Pilus chaperone [49355] (5)
      1. Pilus chaperone PapD, N-domain [49356]
        consists of two domains of this fold; domain 2 has an additional strand at the C-terminus
        1. Escherichia coli [TaxId: 562] [49357] (12) picpic
      2. Periplasmic chaperone FimC [49358]
        1. Escherichia coli [TaxId: 562] [49359] (6) picpic
      3. Periplasmic chaperone SfaE [74860]
        1. Escherichia coli [TaxId: 562] [74861] (1) picpic
      4. Chaperone protein Caf1m [89205]
        1. Yersinia pestis [TaxId: 632] [89206] (9) picpic
      5. Periplasmic chaperone SafB [158907]
        1. Salmonella typhimurium [TaxId: 90371] [158908] (2) picpic
          SQ Q8ZRK3 21-151
    2. MSP-like [49360] (5)
      Pfam 00635
      1. Major sperm protein, MSP [49361]
        1. Pig roundworm (Ascaris suum), alpha isoform [TaxId: 6253] [49362] (3) picpic
        2. Nematode (Caenorhabditis elegans) [TaxId: 6239] [74862] (1) picpic
      2. WR4 [89207]
        1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [89208] (1) picpic
          4L504 (ZC168.6) gene product
      3. SSP-19 [101540]
        1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [101541] (1) picpic
          C55C2.2 gene product
      4. MSP domain containing protein 2, Mospd2 [117061]
        1. Mouse (Mus musculus) [TaxId: 10090] [117062] (1) picpic
          SQ Q9CWP6 317-455
  15. Purple acid phosphatase, N-terminal domain [49363] (1)
    link to SUPERFAMILY database - Superfamily
    1. Purple acid phosphatase, N-terminal domain [49364] (2)
      1. Purple acid phosphatase, N-terminal domain [49365]
        1. Kidney bean (Phaseolus vulgaris) [TaxId: 3885] [49366] (9) picpic
        2. Sweet potato (Ipomoea batatas) [TaxId: 4120] [117063] (1) picpic
          SQ Q9SE00 39-462
  16. Fungal immunomodulatory protein, FIP [101542] (1)
    link to SUPERFAMILY database - Superfamily
    1. Fungal immunomodulatory protein, FIP [101543] (1)
      1. Fungal immunomodulatory protein, FIP [101544]
        contains extra N-terminal sudbomain involved in dimerisation
        1. Golden needle mushroom (Flammulina velutipes) [TaxId: 38945] [101545] (1) picpic
  17. Superoxide reductase-like [49367] (1)
    link to SUPERFAMILY database - Superfamily
    1. Superoxide reductase-like [49368] (3)
      binds iron in the site that is topologically equivalent to the copper-binding site of cupredoxins
      1. Superoxide reductase (SOR) [49369]
        1. Archaeon Pyrococcus furiosus [TaxId: 2261] [49370] (3) picpic
      2. Desulfoferrodoxin C-terminal domain [49371]
        1. Desulfovibrio desulfuricans [TaxId: 876] [49372] (13) picpic
        2. Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887] [110068] (3) picpic
          SQ Q46495
  18. Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) [74863] (1)
    link to SUPERFAMILY database - Superfamily
    1. Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) [74864] (1)
      1. Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) [74865]
        1. Escherichia coli [TaxId: 562] [74866] (6) picpic
  19. Invasin/intimin cell-adhesion fragments [49373] (1)
    link to SUPERFAMILY database - Superfamily
    1. Invasin/intimin cell-adhesion fragments [49374] (2)
      1. Intimin [49375]
        1. Escherichia coli [TaxId: 562] [49376] (3) picpic
          an enteropathogenic serotype
      2. Invasin [49377]
        1. Yersinia pseudotuberculosis [TaxId: 633] [49378] (1) picpic
  20. Antigen MPT63/MPB63 (immunoprotective extracellular protein) [81982] (1)
    link to SUPERFAMILY database - Superfamily
    1. Antigen MPT63/MPB63 (immunoprotective extracellular protein) [81983] (1)
      1. Antigen MPT63/MPB63 (immunoprotective extracellular protein) [81984]
        1. Mycobacterium tuberculosis [TaxId: 1773] [81985] (1) picpic
  21. Tp47 lipoprotein, middle and C-terminal domains [81986] (1)
    link to SUPERFAMILY database - Superfamily
    1. Tp47 lipoprotein, middle and C-terminal domains [81987] (1)
      contains two different domains of immunoglobulin-like fold
      1. Tp47 lipoprotein, middle and C-terminal domains [81988]
        a penicillin-binding protein with carboxypeptidase activity
        1. Treponema pallidum [TaxId: 160] [81989] (1) picpic
  22. ASF1-like [101546] (1)
    contains extra C-terminal strand
    link to SUPERFAMILY database - Superfamily
    1. ASF1-like [101547] (3)
      1. Anti-silencing protein 1, ASF1 [101548]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101549] (3) picpic
        2. Schizosaccharomyces pombe [TaxId: 4896] [158909] (13) picpic
          SQ O74515 1-161
        3. Human (Homo sapiens) [TaxId: 9606] [158910] (5) picpic
          SQ Q6IA08 1-154! SQ Q9Y294 1-154! SQ Q9Y294 1-156
  23. ApaG-like [110069] (1)
    link to SUPERFAMILY database - Superfamily
    1. ApaG-like [110070] (3)
      Pfam 04379; dimeric in crystals; this dimer is a probable biological unit
      1. ApaG [110071]
        1. Shewanella oneidensis [TaxId: 70863] [110072] (1) picpic
          SQ Q8EB92
        2. Bordetella pertussis [TaxId: 520] [117064] (1) picpic
          SQ Q7VU61
        3. Vibrio cholerae [TaxId: 666] [117065] (1) picpic
          SQ Q9KUS3
  24. Accessory protein X4 (ORF8, ORF7a) [117066] (1)
    link to SUPERFAMILY database - Superfamily
    1. Accessory protein X4 (ORF8, ORF7a) [117067] (1)
      1. Accessory protein X4 (ORF8, ORF7a) [117068]
        1. SARS coronavirus [TaxId: 227859] [117069] (1) picpic
          SQ P59635 15-82
  25. LEA14-like [117070] (1)
    link to SUPERFAMILY database - Superfamily
    1. LEA14-like [117071] (1)
      Pfam 03168
      1. Putative dessication related protein LEA14 [117072]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117073] (1) picpic
          SQ O03983
  26. ICP-like [141066] (1)
    topological variant with similarity to the Cupredoxin-like fold (scop_cf 49502) in the N-terminal region
    link to SUPERFAMILY database - Superfamily
    1. ICP-like [141067] (2)
      PfamB 014070
      1. Chagasin [141068]
        1. Trypanosoma cruzi [TaxId: 5693] [141069] (9) picpic
          SQ Q966X9 3-110
      2. Inhibitor of cysteine peptidases, ICP [141070]
        1. Leishmania mexicana [TaxId: 5665] [141071] (1) picpic
          SQ Q868H1 1-113
  27. CalX-like [141072] (1)
    link to SUPERFAMILY database - Superfamily
    1. CalX-beta domain [141073] (1)
      Pfam 03160
      1. Sodium/calcium exchanger 1 [141074]
        1. Dog (Canis familiaris) [TaxId: 9615] [141075] (3) picpic
          SQ P23685 402-534! SQ P23685 403-541! SQ P23685 533-724
  28. NEAT domain-like [158911] (1)
    1. NEAT domain [158912] (3)
      Pfam 05031; iron transport-associated domain
      1. Iron-regulated surface determinant protein C, IsdC [158913]
        1. Staphylococcus aureus [TaxId: 1280] [158914] (2) picpic
          SQ Q7A654 29-150
      2. Iron-regulated surface determinant protein A, IsdA [158915]
        1. Staphylococcus aureus [TaxId: 1280] [158916] (7) picpic
          SQ Q7A152 64-184! SQ Q99UX4 63-184
      3. Iron-regulated surface determinant protein H, IsdH [158917]
        1. Staphylococcus aureus [TaxId: 1280] [158918] (1) picpic
          SQ Q6G8J7 86-229
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk